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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs9936320 chr16:67455604 C/A 9.53E-6 405 15.2 15.33 19.2 KM Plot
LGG rs9938862 chr16:67723801 T/C 2.77E-11 407 15.17 18.37 6.47 KM Plot
LGG rs9938929 chr16:67733020 C/A 2.77E-11 407 15.17 18.37 6.47 KM Plot
LGG rs9939085 chr16:67733237 C/T 2.77E-11 407 15.17 18.37 6.47 KM Plot
LGG rs9955297 chr18:33651514 A/G 9.42E-7 403 8.07 14.57 15.67 KM Plot
LGG rs9957889 chr18:47069031 C/G 0.000121 407 15.33 14.77 9.53 KM Plot
LGG rs9969713 chr9:94613768 G/A 6.99E-5 407 15.18 16.47 17.55 KM Plot
LGG rs9978626 chr21:43214225 G/A 0.000223 395 15.37 14.78 13.2 KM Plot
LGG rs9982806 chr21:45569644 G/T 3.65E-6 406 4.43 15.97 15.47 KM Plot
LGG rs9991367 chr4:110894301 A/G 1.66E-5 407 7.8 14.73 15.63 KM Plot
LIHC rs10004309 chr4:44857711 G/C 0.00018 188 13.97 13.57 7.17 KM Plot
LIHC rs1001530 chr5:176985515 A/G 5.53E-5 188 13.67 9.45 9.6 KM Plot
LIHC rs10018722 chr4:44644428 T/G 6.05E-5 188 5.7 13.17 16.33 KM Plot
LIHC rs10020551 chr4:44707815 G/T 2.82E-6 192 3.37 13.55 16.07 KM Plot
LIHC rs10020617 chr4:110755215 T/C 9.21E-5 179 13.83 13.13 3.43 KM Plot